Microbiome Research Reports
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Editor-in-Chief: Marco Ventura
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Editor-in-Chief: Marco Ventura
Median time to first editorial decision: 7 days
Home Articles Special Topics Volumes Webinars Videos

Microbiome Research Reports

In vitro human gut microbiota fermentation models: opportunities, challenges, and pitfalls

Mode of action of Akkermansia muciniphila in the intestinal dialogue: role of extracellular proteins, metabolites and cell envelope components

Microbial interactions and the homeostasis of the gut microbiome: the role of Bifidobacterium

MEGAnnotator2: a pipeline for the assembly and annotation of microbial genomes

Folate-producing bifidobacteria: metabolism, genetics, and relevance

A responder-informed gut microbial consortium enhances anti-PD-1 efficacy in a mouse cancer model

Articles

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MUC2 shifts the metabolic profiles of commensal bacteria in defined microbial communities

Erin Chard, ...Melinda A. Engevik
Open Access Original Article DOI: 10.20517/mrr.2025.91 21 Jan 2026
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Immunomodulatory properties of dietary polyphenols: a role for combating infections at mucosal surfaces?

Mona Sharma, ...Andrew R. Williams
Open Access Mini Review DOI: 10.20517/mrr.2025.81 10 Dec 2025
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Benchmarking and optimizing microbiome-based bioinformatics workflow for non-invasive detection of intestinal tumors

Yangyang Sun, ...Xiaoquan Su
Open Access Original Article DOI: 10.20517/mrr.2025.75 1 Dec 2025
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Disclosing the effects of pea-derived proteins on the human gut microbiota

Leonardo Mancabelli, ...Marco Ventura
Open Access Original Article DOI: 10.20517/mrr.2025.77 25 Nov 2025
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Taxonomic and mechanistic insights into gut microbiota bioaccumulation of entacapone using bioorthogonal drug labelling

Linda M. Guantai, ...Fatima C. Pereira
Open Access Original Article DOI: 10.20517/mrr.2025.73 20 Nov 2025
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Past, present, and future of microbiome-based therapies

Pilar ManriquePilar Manrique, ... David Rios-CovianDavid Rios-Covian
Open Access Review DOI: 10.20517/mrr.2023.80 17 Mar 2024
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Probiotics, prebiotics, synbiotics and other microbiome-based innovative therapeutics to mitigate obesity and enhance longevity via the gut-brain axis

Jacqueline L. BoyajianJacqueline L. Boyajian, ... Satya PrakashSatya Prakash
Open Access Review DOI: 10.20517/mrr.2024.05 16 May 2024
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Screening competition and cross-feeding interactions during utilization of human milk oligosaccharides by gut microbes

Romina Díaz, Daniel Garrido
Open Access Original Article DOI: 10.20517/mrr.2023.61 31 Dec 2023
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Tools and Resources for Microbiome Research

Prof. Wei-Hua Chen; Prof. Ju-Sheng Zheng

Submission Deadline: 7 Jul 2026

Published articles: 0

Gut Mycobiome and Metabolic Health

Assoc. Prof. Kun Li; Assoc. Prof. Haifeng Wang

Submission Deadline: 1 Jun 2026

Published articles: 0

Coming soon.

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Themed Collections
bifidobacteria
gut microbiota
microbiome
probiotics
bacteriophage
phages
antibiotics
microbial
infant gut
microbial ecology
intestinal microbiome
host-microbe interactions
intestinal fungi
microbial ecosystems
metagenomics
microbial DNA sequencing
bifidobacterium
genomic
irritable bowel syndrome
Topic: Akkermansia muciniphila and Its Health Benefits: From Associations to Causality
Topic: Exploring the Infant Microbiome: From Birth to Early Growth and Development
Topic: Microbiomes of Arthropods and Their Environments
Volume 4, Issue 4 (in progress)
Volume 4, Issue 3
Volume 4, Issue 2
Volume 4, Issue 1
Volume 3, Issue 4
Volume 3, Issue 3
Volume 3, Issue 2
Volume 3, Issue 1
Volume 2, Issue 4
Volume 2, Issue 3
Volume 2, Issue 2
Volume 2, Issue 1
Volume 1, Issue 4
Volume 1, Issue 3
Volume 1, Issue 2
Volume 1, Issue 1
Articles Collection
Special Issue: Akkermansia muciniphila and Its Health Benefits: From Associations to Causality
2025 Annual Report of Microbiome Research Reports
Reviewing the Journal’s Development and Achievements in 2025
MRR Now Indexed in the Asian Science Citation Index (ASCI)
A Key Milestone in Enhancing Visibility and Influence in Global Microbiome Research
Frontiers in Gut Microbiome Research: From Pregnancy Health to Pediatric Metabolic Diseases
Highlights from Our Recent Webinar
| Chair: Prof. Ju-Sheng Zheng
| Speakers: Prof. Yan Ni, Dr. Zelei Miao
Microbiome Research Reports Scholars Recognized among Highly Cited Researchers 2025
7 Editorial Board Members, 10 Contributing Authors, and 1 Guest Editor Honored for Outstanding Impact in Microbiology and Cross-Field Research
Microbiome Research Reports Receives Its First Impact Factor of 3.8
We are delighted to announce that Microbiome Research Reports (MRR) has received its first official Impact Factor of 3.8, as published in the 2025 edition of Clarivate's Journal Citation Reports (JCR) on June 18.

In vitro human gut microbiota fermentation models: opportunities, challenges, and pitfalls

Mode of action of Akkermansia muciniphila in the intestinal dialogue: role of extracellular proteins, metabolites and cell envelope components

Microbial interactions and the homeostasis of the gut microbiome: the role of Bifidobacterium

MEGAnnotator2: a pipeline for the assembly and annotation of microbial genomes

Folate-producing bifidobacteria: metabolism, genetics, and relevance

A responder-informed gut microbial consortium enhances anti-PD-1 efficacy in a mouse cancer model

Past, present, and future of microbiome-based therapies
Pilar ManriquePilar Manrique, ... David Rios-CovianDavid Rios-Covian
Open Access | Review | 17 Mar 2024
Views: | Downloads:
Download PDF
Probiotics, prebiotics, synbiotics and other microbiome-based innovative therapeutics to mitigate obesity and enhance longevity via the gut-brain axis
Jacqueline L. BoyajianJacqueline L. Boyajian, ... Satya PrakashSatya Prakash
Open Access | Review | 16 May 2024
Views: | Downloads:
Download PDF
Screening competition and cross-feeding interactions during utilization of human milk oligosaccharides by gut microbes
Romina Díaz, Daniel Garrido
Open Access | Original Article | 31 Dec 2023
Views: | Downloads:
Download PDF

Tools and Resources for Microbiome Research

Prof. Wei-Hua Chen; Prof. Ju-Sheng Zheng

Submission Deadline: 7 Jul 2026

Published articles: 0

Gut Mycobiome and Metabolic Health

Assoc. Prof. Kun Li; Assoc. Prof. Haifeng Wang

Submission Deadline: 1 Jun 2026

Published articles: 0

Coming soon.

Volume 4, Issue 4 (in progress)
Volume 4, Issue 3
Volume 4, Issue 2
Volume 4, Issue 1
Volume 3, Issue 4
Volume 3, Issue 3
Volume 3, Issue 2
Volume 3, Issue 1
Volume 2, Issue 4
Volume 2, Issue 3
Volume 2, Issue 2
Volume 2, Issue 1
Volume 1, Issue 4
Volume 1, Issue 3
Volume 1, Issue 2
Volume 1, Issue 1
Articles Collection
Microbiome Research Reports
ISSN 2771-5965 (Online)
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All published articles are preserved here permanently:

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